1. Huang J. Horizontal gene transfer in eukaryotes: the weak-link model. Bioessays. 2013 Oct; 35(10): 868-75.  

2. Huang, J. and Yue J. 2013. Horizontal gene transfer in the evolution of photosynthetic eukaryotes. Journal of Systematics and Evolution, 51:13-29 

3. Yue J, Sun G, Hu X, Huang J. The scale and evolutionary significance of horizontal gene transfer in the choanoflagellate Monosiga brevicollis. BMC Genomics. 2013 Oct 25; 14(1):729. 

4. Yue J, Hu X, Huang J. Horizontal gene transfer in the innovation and adaptation of land plants. Plant Signal Behav. 2013 May 1;8(5). 

5. Yue J, Hu XY, Sun H, Yang YP, Huang J. Widespread impact of horizontal gene transfer on plant colonization of land. Nature communication. 2012  

6. Yue J, Huang J. Algal genes in aplastidic eukaryotes are not necessarily derived from historical plastids. Mob Genet Elements. 2012 Jul 1; 2(4):193-196. 

7. Ni T, Yue J, Sun G, Zou Y, Wen J, Huang J. Ancient gene transfer from algae to animals: Mechanisms and evolutionary significance. BMC Evol Biol. 2012 Jun 12;12(1):83. 

8. Che D, Hasan MS, Wang H, Fazekas J, Huang J, Liu Q. EGID: an ensemble algorithm for improved genomic island detection in genomic sequences. Bioinformation. 2011; 7 (6):311-4. 

9. Yin Y, Huang J, Gu X, Bar-Peled M, Xu Y. Evolution of plant nucleotide-sugar interconversion enzymes. PLoS One. 2011; 6 (11):e27995. 

10. Cao J, Huang J, Yang Y, Hu Xiangyang. Analyses of the oligopeptide transporter gene family in poplar and grape. BMC Genomics. 2011 Sep 26; 12:465. 

11. Sun, G., Z. Yang, T. Kosch, K. Summers, and J. Huang. 2011. Evidence for acquisition of virulence factors in pathogenic chytrids. BMC Evol Biol, 11:195. 

12. Yang Z, Huang J. De novo origin of new genes with introns in Plasmodium vivax. FEBS Lett. 2011 Feb 18; 585(4):641-4. 

13. Sun, G., Z. Yang, A. Iswar, and J. Huang. 2010. Algal genes in the closest relatives of animals. Molecular Biology and Evolution, 24:587-595.